Spoiler-ish? Maybe... I haven't finished the new NIN quests.
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SpoilerOne thing I've noticed between the original NIN quests, some MSQ stuff, and what I've done so far of the new NIN quests... there seems to be some distrust within the Domans for ninjas. Doma fell after (at least one) ninja master gave up their secrets to the Garleans, and there's an NPC that clearly states "when Doma fell, it was with your [meaning ninjas] blades in our backs". They seem to be okay with ninjas they're personally able to vouch for or have reputations like Yugiri and her retainers, but an 'unfamiliar' ninja could be viewed with distrust and masters 'forced into hiding' to avoid being hunted by those outside their community/village/social circle.
At least, that was my take of things so far. I could be wrong.
At least, that was my take of things so far. I could be wrong.