It could be that the soul is a metaphysical entity,. If you think about it, aether is a very physical thing. It can be measured and you can create devices that let you 'see' it (like the googles the Scions wear). Souls, however, cannot be seen or measured. Though there are some enemies called "souls" that appear in ruins or areas where the dead would be. I don't think it's ever mentioned if these 'soul' creatures are really souls or just some kind of monster that just happens to be called that.
It would also explain why an afterlife (Thal's realm) can exist along with the idea of the ever recycling Lifestream: aether is what makes the physical realm possible, but isn't linked to the metaphysical. It also explains why the Primals need it to manifest or why their manifestations would eventually kill the planet: they are literally eating on the substance of physical reality.
It would also explain why an afterlife (Thal's realm) can exist along with the idea of the ever recycling Lifestream: aether is what makes the physical realm possible, but isn't linked to the metaphysical. It also explains why the Primals need it to manifest or why their manifestations would eventually kill the planet: they are literally eating on the substance of physical reality.